Detailed information of SNP:
|
SNP ID:
sf0726454122(Gbrowse)
Chromosome: chr07 Position: 26454122 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1340 | 83.28% | 16.72% |
| All Indica | 764 | 75.26% | 24.74% |
| All Japonica | 459 | 98.04% | 1.96% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 361 | 85.60% | 14.40% |
| Indica II | 198 | 55.56% | 44.44% |
| Indica Intermediate | 205 | 76.10% | 23.90% |
| Temperate Japonica | 323 | 100.00% | 0.00% |
| Tropical Japonica | 75 | 94.67% | 5.33% |
| Japonica Intermediate | 61 | 91.80% | 8.20% |
| Group VI/Aromatic | 10 | 30.00% | 70.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726454122 | G->A | INTERGENIC | None |