Detailed information of SNP:
|
SNP ID:
sf0726455025(Gbrowse)
Chromosome: chr07 Position: 26455025 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 87.58% | 12.42% |
| All Indica | 765 | 94.12% | 5.88% |
| All Japonica | 488 | 75.61% | 24.39% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 360 | 89.72% | 10.28% |
| Indica II | 198 | 99.49% | 0.51% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 89 | 15.73% | 84.27% |
| Japonica Intermediate | 65 | 63.08% | 36.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726455025 | G->A | INTERGENIC | None |