Detailed information of SNP:
|
SNP ID:
sf0726455328(Gbrowse)
Chromosome: chr07 Position: 26455328 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.52% | 13.48% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 496 | 73.39% | 26.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726455328 | G->A | INTERGENIC | None |