Detailed information of SNP:
|
SNP ID:
sf0726457645(Gbrowse)
Chromosome: chr07 Position: 26457645 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 55.37% | 44.63% |
| All Indica | 798 | 33.46% | 66.54% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 29.33% | 70.67% |
| Indica II | 213 | 23.47% | 76.53% |
| Indica Intermediate | 210 | 50.95% | 49.05% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726457645 | T->G | INTERGENIC | None |