Detailed information of SNP:
|
SNP ID:
sf0726459625(Gbrowse)
Chromosome: chr07 Position: 26459625 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 85.31% | 14.69% |
| All Indica | 797 | 93.73% | 6.27% |
| All Japonica | 497 | 70.62% | 29.38% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726459625 | G->T | INTERGENIC | None |