Detailed information of SNP:
|
SNP ID:
sf0726478969(Gbrowse)
Chromosome: chr07 Position: 26478969 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 89.46% | 10.54% |
| All Indica | 797 | 93.73% | 6.27% |
| All Japonica | 495 | 82.22% | 17.78% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 88.47% | 11.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726478969 | A->T | INTERGENIC | None |