Detailed information of SNP:
|
SNP ID:
sf0726516329(Gbrowse)
Chromosome: chr07 Position: 26516329 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 84.38% | 15.62% |
| All Indica | 797 | 88.96% | 11.04% |
| All Japonica | 497 | 75.45% | 24.55% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726516329 | C->T | LOC_Os07g44370(LOC_Os07g44370.1) | UTR_3_PRIME |