Detailed information of SNP:
|
SNP ID:
sf0726516539(Gbrowse)
Chromosome: chr07 Position: 26516539 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 58.39% | 41.61% |
| All Indica | 797 | 47.68% | 52.32% |
| All Japonica | 489 | 80.98% | 19.02% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 23.80% | 76.20% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 88 | 32.95% | 67.05% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726516539 | G->A | INTERGENIC | None |