Detailed information of SNP:
|
SNP ID:
sf0726518361(Gbrowse)
Chromosome: chr07 Position: 26518361 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 53.46% | 46.54% |
| All Indica | 799 | 45.93% | 54.07% |
| All Japonica | 495 | 74.95% | 25.05% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 21.87% | 78.13% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 46.92% | 53.08% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 93 | 16.13% | 83.87% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726518361 | T->G | INTERGENIC | None |