Detailed information of SNP:
|
SNP ID:
sf0726544927(Gbrowse)
Chromosome: chr07 Position: 26544927 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1270 | 53.54% | 46.46% |
| All Indica | 656 | 20.73% | 79.27% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 373 | 16.89% | 83.11% |
| Indica II | 97 | 16.49% | 83.51% |
| Indica Intermediate | 186 | 30.65% | 69.35% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726544927 | C->T | INTERGENIC | None |