Detailed information of SNP:
|
SNP ID:
sf0726554814(Gbrowse)
Chromosome: chr07 Position: 26554814 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.84% | 43.16% |
| All Indica | 799 | 87.36% | 12.64% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726554814 | T->G | INTERGENIC | None |