Detailed information of SNP:
|
SNP ID:
sf0726558152(Gbrowse)
Chromosome: chr07 Position: 26558152 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 92.30% | 7.70% |
| All Indica | 797 | 91.84% | 8.16% |
| All Japonica | 496 | 91.13% | 8.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 72.04% | 27.96% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726558152 | T->C | INTERGENIC | None |