Detailed information of SNP:
|
SNP ID:
sf0726565566(Gbrowse)
Chromosome: chr07 Position: 26565566 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 85.41% | 14.59% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 484 | 73.14% | 26.86% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 324 | 95.06% | 4.94% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 66 | 43.94% | 56.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726565566 | T->C | INTERGENIC | None |