Detailed information of SNP:
|
SNP ID:
sf0726575738(Gbrowse)
Chromosome: chr07 Position: 26575738 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1304 | 92.10% | 7.90% |
| All Indica | 709 | 87.17% | 12.83% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 328 | 85.67% | 14.33% |
| Indica II | 188 | 89.36% | 10.64% |
| Indica Intermediate | 193 | 87.56% | 12.44% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 4 | 75.00% | 25.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726575738 | G->A | LOC_Os07g44499(LOC_Os07g44499.1) | INTRON |