Detailed information of SNP:
|
SNP ID:
sf0726582798(Gbrowse)
Chromosome: chr07 Position: 26582798 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 50.57% | 49.43% |
| All Indica | 783 | 82.76% | 17.24% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 368 | 81.52% | 18.48% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 206 | 73.30% | 26.70% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726582798 | G->A | LOC_Os07g44520(LOC_Os07g44520.1) | INTRON |