Detailed information of SNP:
|
SNP ID:
sf0726583191(Gbrowse)
Chromosome: chr07 Position: 26583191 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 52.97% | 47.03% |
| All Indica | 764 | 22.51% | 77.49% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 40.91% | 59.09% |
| Indica I | 357 | 27.17% | 72.83% |
| Indica II | 202 | 9.41% | 90.59% |
| Indica Intermediate | 205 | 27.32% | 72.68% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726583191 | C->T | LOC_Os07g44520(LOC_Os07g44520.1) | Non-Synonymous SNP |