Detailed information of SNP:
|
SNP ID:
sf0726583862(Gbrowse)
Chromosome: chr07 Position: 26583862 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 74.35% | 25.65% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 42.66% | 57.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 51.04% | 48.96% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726583862 | G->A | LOC_Os07g44520(LOC_Os07g44520.1) | INTRON |