Detailed information of SNP:
|
SNP ID:
sf0726596623(Gbrowse)
Chromosome: chr07 Position: 26596623 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 84.44% | 15.56% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 494 | 70.45% | 29.55% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 333 | 90.99% | 9.01% |
| Tropical Japonica | 93 | 18.28% | 81.72% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726596623 | C->T | LOC_Os07g44540(LOC_Os07g44540.1) | Non-Synonymous SNP |