Detailed information of SNP:
|
SNP ID:
sf0726725904(Gbrowse)
Chromosome: chr07 Position: 26725904 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 73.93% | 26.07% |
| All Indica | 795 | 96.10% | 3.90% |
| All Japonica | 480 | 33.12% | 66.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 326 | 11.96% | 88.04% |
| Tropical Japonica | 88 | 84.09% | 15.91% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726725904 | T->C | INTERGENIC | None |