Detailed information of SNP:
|
SNP ID:
sf0726725996(Gbrowse)
Chromosome: chr07 Position: 26725996 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 76.26% | 23.74% |
| All Indica | 791 | 97.72% | 2.28% |
| All Japonica | 459 | 34.64% | 65.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 97.28% | 2.72% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 301 | 12.62% | 87.38% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 64 | 71.88% | 28.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726725996 | A->G | INTERGENIC | None |