Detailed information of SNP:
|
SNP ID:
sf0726726378(Gbrowse)
Chromosome: chr07 Position: 26726378 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 73.42% | 26.58% |
| All Indica | 796 | 96.36% | 3.64% |
| All Japonica | 490 | 32.04% | 67.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 330 | 11.21% | 88.79% |
| Tropical Japonica | 92 | 79.35% | 20.65% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726726378 | A->G | INTERGENIC | None |