Detailed information of SNP:
|
SNP ID:
sf0726738464(Gbrowse)
Chromosome: chr07 Position: 26738464 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1324 | 75.76% | 24.24% |
| All Indica | 798 | 87.34% | 12.66% |
| All Japonica | 404 | 54.95% | 45.05% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 244 | 67.62% | 32.38% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 66 | 39.39% | 60.61% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726738464 | C->T | INTERGENIC | None |