Detailed information of SNP:
|
SNP ID:
sf0726782009(Gbrowse)
Chromosome: chr07 Position: 26782009 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 92.07% | 7.93% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 492 | 83.94% | 16.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 94.91% | 5.09% |
| Tropical Japonica | 91 | 35.16% | 64.84% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726782009 | G->A | LOC_Os07g44860(LOC_Os07g44860.1) | UTR_3_PRIME |