Detailed information of SNP:
|
SNP ID:
sf0726783834(Gbrowse)
Chromosome: chr07 Position: 26783834 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.65% | 42.35% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726783834 | G->A | INTERGENIC | None |