Detailed information of SNP:
|
SNP ID:
sf0726836552(Gbrowse)
Chromosome: chr07 Position: 26836552 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.67% | 49.33% |
| All Indica | 798 | 79.70% | 20.30% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 62.03% | 37.97% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726836552 | G->T | INTERGENIC | None |