Detailed information of SNP:
|
SNP ID:
sf0726846026(Gbrowse)
Chromosome: chr07 Position: 26846026 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 51.24% | 48.76% |
| All Indica | 795 | 22.39% | 77.61% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 373 | 41.02% | 58.98% |
| Indica II | 212 | 2.36% | 97.64% |
| Indica Intermediate | 210 | 9.52% | 90.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726846026 | C->T | LOC_Os07g45000(LOC_Os07g45000.1) | INTRON |