Detailed information of SNP:
|
SNP ID:
sf0726848881(Gbrowse)
Chromosome: chr07 Position: 26848881 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.28% | 49.72% |
| All Indica | 797 | 20.83% | 79.17% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 37.97% | 62.03% |
| Indica II | 212 | 1.89% | 98.11% |
| Indica Intermediate | 211 | 9.48% | 90.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726848881 | A->T | LOC_Os07g45000(LOC_Os07g45000.1) | UTR_3_PRIME |