Detailed information of SNP:
|
SNP ID:
sf0726878165(Gbrowse)
Chromosome: chr07 Position: 26878165 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 88.30% | 11.70% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 77.06% | 22.94% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726878165 | T->C | INTERGENIC | None |