Detailed information of SNP:
|
SNP ID:
sf0726878302(Gbrowse)
Chromosome: chr07 Position: 26878302 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 93.00% | 7.00% |
| All Indica | 795 | 98.36% | 1.64% |
| All Japonica | 496 | 84.07% | 15.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 96.50% | 3.50% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726878302 | A->T | INTERGENIC | None |