Detailed information of SNP:
|
SNP ID:
sf0726930202(Gbrowse)
Chromosome: chr07 Position: 26930202 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 55.48% | 44.52% |
| All Indica | 796 | 87.81% | 12.19% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726930202 | C->T | INTERGENIC | None |