Detailed information of SNP:
|
SNP ID:
sf0726930827(Gbrowse)
Chromosome: chr07 Position: 26930827 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.65% | 45.35% |
| All Indica | 799 | 87.61% | 12.39% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726930827 | A->G | INTERGENIC | None |