Detailed information of SNP:
|
SNP ID:
sf0726931831(Gbrowse)
Chromosome: chr07 Position: 26931831 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 77.73% | 22.27% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 56.74% | 43.26% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 46.87% | 53.13% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726931831 | C->T | INTERGENIC | None |