Detailed information of SNP:
|
SNP ID:
sf0726932461(Gbrowse)
Chromosome: chr07 Position: 26932461 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 87.30% | 12.70% |
| All Indica | 795 | 78.62% | 21.38% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 61 | 96.72% | 3.28% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 213 | 33.33% | 66.67% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726932461 | C->T | INTERGENIC | None |