Detailed information of SNP:
|
SNP ID:
sf0726938787(Gbrowse)
Chromosome: chr07 Position: 26938787 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1362 | 86.93% | 13.07% |
| All Indica | 774 | 78.17% | 21.83% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 38 | 97.37% | 2.63% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 197 | 27.41% | 72.59% |
| Indica Intermediate | 203 | 87.19% | 12.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726938787 | A->G | INTERGENIC | None |