Detailed information of SNP:
|
SNP ID:
sf0726943959(Gbrowse)
Chromosome: chr07 Position: 26943959 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 62.39% | 37.61% |
| All Indica | 797 | 39.15% | 60.85% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 53.48% | 46.52% |
| Indica II | 212 | 8.49% | 91.51% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726943959 | T->A | INTERGENIC | None |