Detailed information of SNP:
|
SNP ID:
sf0726944891(Gbrowse)
Chromosome: chr07 Position: 26944891 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 60.35% | 39.65% |
| All Indica | 791 | 68.39% | 31.61% |
| All Japonica | 497 | 45.47% | 54.53% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 373 | 52.55% | 47.45% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 205 | 67.80% | 32.20% |
| Temperate Japonica | 335 | 48.96% | 51.04% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726944891 | C->T | INTERGENIC | None |