Detailed information of SNP:
|
SNP ID:
sf0726945913(Gbrowse)
Chromosome: chr07 Position: 26945913 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 59.52% | 40.48% |
| All Indica | 783 | 67.56% | 32.44% |
| All Japonica | 497 | 44.87% | 55.13% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 373 | 50.94% | 49.06% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 197 | 67.51% | 32.49% |
| Temperate Japonica | 335 | 48.06% | 51.94% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726945913 | G->A | INTERGENIC | None |