Detailed information of SNP:
|
SNP ID:
sf0726947780(Gbrowse)
Chromosome: chr07 Position: 26947780 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.77% | 41.23% |
| All Indica | 799 | 65.83% | 34.17% |
| All Japonica | 497 | 45.47% | 54.53% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 49.87% | 50.13% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 48.66% | 51.34% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726947780 | G->A | INTERGENIC | None |