Detailed information of SNP:
|
SNP ID:
sf0726948438(Gbrowse)
Chromosome: chr07 Position: 26948438 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.62% | 42.38% |
| All Indica | 798 | 65.54% | 34.46% |
| All Japonica | 497 | 44.87% | 55.13% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 50.00% | 50.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 47.76% | 52.24% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726948438 | T->G | INTERGENIC | None |