Detailed information of SNP:
|
SNP ID:
sf0726948727(Gbrowse)
Chromosome: chr07 Position: 26948727 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.10% | 43.90% |
| All Indica | 799 | 65.08% | 34.92% |
| All Japonica | 497 | 44.87% | 55.13% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 49.87% | 50.13% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 48.06% | 51.94% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726948727 | T->A | INTERGENIC | None |