Detailed information of SNP:
|
SNP ID:
sf0726948923(Gbrowse)
Chromosome: chr07 Position: 26948923 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 60.76% | 39.24% |
| All Indica | 798 | 71.05% | 28.95% |
| All Japonica | 496 | 44.76% | 55.24% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 61.76% | 38.24% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 48.06% | 51.94% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726948923 | A->G | LOC_Os07g45150(LOC_Os07g45150.1) | INTRON |