Detailed information of SNP:
|
SNP ID:
sf0726949191(Gbrowse)
Chromosome: chr07 Position: 26949191 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 97.81% | 2.19% |
| All Indica | 756 | 96.03% | 3.97% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 96.11% | 3.89% |
| Indica II | 189 | 96.83% | 3.17% |
| Indica Intermediate | 207 | 95.17% | 4.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726949191 | G->T | LOC_Os07g45150(LOC_Os07g45150.1) | Non-Synonymous SNP |