Detailed information of SNP:
|
SNP ID:
sf0726961708(Gbrowse)
Chromosome: chr07 Position: 26961708 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 63.31% | 36.69% |
| All Indica | 777 | 68.47% | 31.53% |
| All Japonica | 464 | 53.66% | 46.34% |
| Aus | 65 | 55.38% | 44.62% |
| Indica I | 355 | 53.52% | 46.48% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 64.11% | 35.89% |
| Temperate Japonica | 330 | 53.03% | 46.97% |
| Tropical Japonica | 72 | 34.72% | 65.28% |
| Japonica Intermediate | 62 | 79.03% | 20.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726961708 | T->A | LOC_Os07g45160(LOC_Os07g45160.1) | UTR_3_PRIME |