Detailed information of SNP:
|
SNP ID:
sf0726963342(Gbrowse)
Chromosome: chr07 Position: 26963342 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 62.47% | 37.53% |
| All Indica | 787 | 41.93% | 58.07% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 373 | 54.42% | 45.58% |
| Indica II | 207 | 6.76% | 93.24% |
| Indica Intermediate | 207 | 54.59% | 45.41% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726963342 | G->A | INTERGENIC | None |