Detailed information of SNP:
|
SNP ID:
sf0726988315(Gbrowse)
Chromosome: chr07 Position: 26988315 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 63.55% | 36.45% |
| All Indica | 795 | 50.19% | 49.81% |
| All Japonica | 492 | 93.90% | 6.10% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 26.93% | 73.07% |
| Indica II | 212 | 76.42% | 23.58% |
| Indica Intermediate | 208 | 65.38% | 34.62% |
| Temperate Japonica | 332 | 98.49% | 1.51% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726988315 | C->T | INTERGENIC | None |