Detailed information of SNP:
|
SNP ID:
sf0727007465(Gbrowse)
Chromosome: chr07 Position: 27007465 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 92.72% | 7.28% |
| All Indica | 797 | 96.99% | 3.01% |
| All Japonica | 468 | 83.55% | 16.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 312 | 75.96% | 24.04% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727007465 | G->A | LOC_Os07g45260(LOC_Os07g45260.1) | UTR_3_PRIME |