Detailed information of SNP:
|
SNP ID:
sf0727042706(Gbrowse)
Chromosome: chr07 Position: 27042706 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 57.03% | 42.97% |
| All Indica | 797 | 85.57% | 14.43% |
| All Japonica | 495 | 4.24% | 95.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727042706 | T->A | LOC_Os07g45330(LOC_Os07g45330.1) | UTR_3_PRIME |