Detailed information of SNP:
|
SNP ID:
sf0727065917(Gbrowse)
Chromosome: chr07 Position: 27065917 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.30% | 42.70% |
| All Indica | 798 | 85.46% | 14.54% |
| All Japonica | 496 | 5.65% | 94.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727065917 | A->G | LOC_Os07g45384(LOC_Os07g45384.1) | INTRON |