Detailed information of SNP:
|
SNP ID:
sf0727089472(Gbrowse)
Chromosome: chr07 Position: 27089472 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 95.00% | 5.00% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727089472 | A->G | LOC_Os07g45410(LOC_Os07g45410.1) | Non-Synonymous SNP |