Detailed information of SNP:
|
SNP ID:
sf0727090517(Gbrowse)
Chromosome: chr07 Position: 27090517 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 57.84% | 42.16% |
| All Indica | 798 | 85.71% | 14.29% |
| All Japonica | 495 | 6.06% | 93.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 63.33% | 36.67% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727090517 | A->G | LOC_Os07g45410(LOC_Os07g45410.1) | Non-Synonymous SNP |